Look at the C and G Tuning Templates, some of the notes remain the same, while others change. The synth keys C, D, E, G, B, Eb, Bb, and F# retain the same cents values. The synth keys F, A, and C# change from one Tuning Template to the other.
Plus, the middle key of the three black keys changes from an Ab (C Tuning Template) to G# (G Tuning Template). This shows that SET black keys do not function as both flats and sharps at the same time. Thus, care must be taken when writing in SET. Listen closely as you write.
Below each tuning template I have provided a chord chart. The first chart shows the chords of the main key for the Tuning Template in question. The other chart shows the additional chords that can be played for the same Tuning Template.
Notice that the selection of useable chords changes from one Tuning Template to the other. This makes sense, because the group of useable notes also changes from one Tuning Template to the other.
Knowing how to change keys in Supplemented Equal Temperament comes with understanding the T/M Chart. The picture at the top of the post shows the chart. (For mobile users, I have included a rotated version of the chart that you can read.)
For those familiar with Harry Partch, the chart looks a lot like a five-limit tonality diamond turned on its side. Why does it? The T/M Chart descended from the tonality diamond, but also differs from it in important ways.